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ClaudeChatGPTPerplexityGeminiMicrosoft CopilotRaycastMeta AIGrokZ.aiQwenKimi
DeepSeekMistralCursorVS CodeWindsurfJetBrainsClineLovableVercel AI SDKLangChain

Use PCR Protocol Optimizer with your AI.

Connect your account once and let the AI you already use work with it, without building another integration. Calculates optimal PCR parameters including annealing temperature, extension time, and reagent concentrations.

Included with plan

Ask AI about this Connector

Developed, maintained, and hosted by Vinkius.

MCP VERIFIED · PRODUCTION READY · VINKIUS GUARANTEED

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Works with modern AI clients that support MCP, including ChatGPT, Claude, Cursor, and more.

ChatGPTClaudeCursorPerplexityGeminiMicrosoft CopilotRaycastMeta AI

Complete set · 4 capabilities

The complete PCR Protocol Optimizer capability set.

These are the exact actions your AI can choose when you ask it to work with PCR Protocol Optimizer.

Capability set01 / 01

01-04

4 capabilities in this set.

Part of 4 available through PCR Protocol Optimizer.

  1. 01

    Calculate annealing params

    Determines the optimal temperature for the primers to bind to the template

  2. 02

    Calculate extension settings

    Calculates how long the extension phase should last based on the target size and enzyme speed

  3. 03

    Estimate cycle count

    Predicts the number of thermal cycles required to reach detectable levels of the amplicon

  4. 04

    Generate reagent concentrations

    Recommends the specific molar concentrations for the reaction mixture

Observed, not estimated

833ms average. Fast in production.

PCR Protocol Optimizer is checked daily against the live service.

Daily averagePeak 1039ms
Aug 29Today
Fastest day
766ms
Slowest day
1039ms
14-day trend
Improving-24%

Connect your client

One URL. Every client.

Activate the Connector, copy your link, and paste it into the client you already use. 4 capabilities arrive ready to run.

Preview access · not provider authentication

The vk_preview_* token belongs to Vinkius preview infrastructure. It lets Claude discover and display the capabilities of PCR Protocol Optimizer, so you can see the experience inside your AI.

It does not authenticate your account with PCR Protocol Optimizer. Actions requiring credentials or live account data may not run until you activate the Connector and authorize the service.

PCR Protocol Optimizer Connector

You're all set. Choose your MCP client and follow the setup instructions.

Connector linkhttps://edge.vinkius.com/vk_preview_yHgfDcbWVLgm6PvcFlE8Yp9L0OftyHO2BLXzyjGZ/mcp

Claude Desktop

Follow the steps below to connect in seconds.

  1. 1In Claude Desktop, open Settings → Connectors.
  2. 2Click “Add custom connector” and paste the connector link above as the remote MCP server URL.
  3. 3Click Add and start a new chat — PCR Protocol Optimizer capabilities are ready to use.
Configuration · claude_desktop_config.jsonCopy
{
  "mcpServers": {
    "pcr-protocol-optimizer-mcp": {
      "url": "https://edge.vinkius.com/vk_preview_yHgfDcbWVLgm6PvcFlE8Yp9L0OftyHO2BLXzyjGZ/mcp"
    }
  }
}
  • Claude
  • ChatGPT
  • Cursor
  • VS Code
  • Windsurf
  • Claude Code
  • JetBrains
  • Cline

Step-by-step instructions for each client are in the guide. How to connect

FAQ

Questions PCR Protocol Optimizer owners ask.

  • 01

    How does the capability determine the annealing temperature?

    The calculate_annealing_params capability calculates the temperature by evaluating the primer Tm, the GC content of the target, and the complexity of the template type.

  • 02

    Can I optimize for different polymerase types?

    Yes, you can use calculate_extension_settings and generate_reagent_concentrations to get specific settings for Standard, High-Fidelity, or Long-Range polymerases.

  • 03

    What inputs are required for cycle estimation?

    To use estimate_cycle_count, you need to provide the template type, the amplicon length, and the GC content.

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