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ClaudeChatGPTPerplexityGeminiMicrosoft CopilotRaycastMeta AIGrokZ.aiQwenKimi
DeepSeekMistralCursorVS CodeWindsurfJetBrainsClineLovableVercel AI SDKLangChain

Use Sequence Alignment Scoring with your AI.

Connect your account once and let the AI you already use work with it, without building another integration. Quantify biological similarity for DNA and Protein sequence alignments.

Included with plan

Ask AI about this Connector

Developed, maintained, and hosted by Vinkius.

MCP VERIFIED · PRODUCTION READY · VINKIUS GUARANTEED

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Works with modern AI clients that support MCP, including ChatGPT, Claude, Cursor, and more.

ChatGPTClaudeCursorPerplexityGeminiMicrosoft CopilotRaycastMeta AI

Complete set · 4 capabilities

The complete Sequence Alignment Scoring capability set.

These are the exact actions your AI can choose when you ask it to work with Sequence Alignment Scoring.

Capability set01 / 01

01-04

4 capabilities in this set.

Part of 4 available through Sequence Alignment Scoring.

  1. 01

    Calculate alignment metrics

    Provides a comprehensive statistical summary of a single sequence alignment

  2. 02

    Compare matrix capabilities

    Answers which scoring matrix is most appropriate for a specific biological context

  3. 03

    Get matrix score

    Retrieves the specific score for a single pair of aligned residues

  4. 04

    Validate sequence composition

    Ensures that the provided sequences only contain valid characters for the biological type being analyzed

Observed, not estimated

911ms average. Fast in production.

Sequence Alignment Scoring is checked daily against the live service.

Daily averagePeak 956ms
Aug 30Today
Fastest day
739ms
Slowest day
956ms
14-day trend
Slowing+5%

Connect your client

One URL. Every client.

Activate the Connector, copy your link, and paste it into the client you already use. 4 capabilities arrive ready to run.

Preview access · not provider authentication

The vk_preview_* token belongs to Vinkius preview infrastructure. It lets Claude discover and display the capabilities of Sequence Alignment Scoring, so you can see the experience inside your AI.

It does not authenticate your account with Sequence Alignment Scoring. Actions requiring credentials or live account data may not run until you activate the Connector and authorize the service.

Sequence Alignment Scoring Connector

You're all set. Choose your MCP client and follow the setup instructions.

Connector linkhttps://edge.vinkius.com/vk_preview_MOpJlaXShDZEs3KPjqoIXX2f0cMXJ4aCcqTmLM3Y/mcp

Claude Desktop

Follow the steps below to connect in seconds.

  1. 1In Claude Desktop, open Settings → Connectors.
  2. 2Click “Add custom connector” and paste the connector link above as the remote MCP server URL.
  3. 3Click Add and start a new chat — Sequence Alignment Scoring capabilities are ready to use.
Configuration · claude_desktop_config.jsonCopy
{
  "mcpServers": {
    "sequence-alignment-scoring-mcp": {
      "url": "https://edge.vinkius.com/vk_preview_MOpJlaXShDZEs3KPjqoIXX2f0cMXJ4aCcqTmLM3Y/mcp"
    }
  }
}
  • Claude
  • ChatGPT
  • Cursor
  • VS Code
  • Windsurf
  • Claude Code
  • JetBrains
  • Cline

Step-by-step instructions for each client are in the guide. How to connect

FAQ

Questions Sequence Alignment Scoring owners ask.

  • 01

    What kind of sequences can I analyze?

    You can analyze both DNA and Protein sequences using the validate_sequence_composition capability to ensure they are valid.

  • 02

    How do I choose the right scoring matrix?

    Use the compare_matrix_capabilities capability to find recommended matrices based on whether you are working with DNA or Protein.

  • 03

    Can I get a full statistical summary of an alignment?

    Yes, the calculate_alignment_metrics capability provides the alignment score, identity percentage, and similarity percentage.

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