PubMed / NCBI Connector for AI agents.
3 live capabilities
Search 37 million biomedical research articles and clinical studies.
Waiting for input…
Why people use PubMed / NCBI
PubMed : Solve the manual search fatigue in biomedical research
This Connector lets you ask your agent to do that work for you. Just tell it what you are looking for and it pulls the abstracts, DOIs, and citation counts into your chat. You get a structured summary of the evidence in seconds.
What Vinkius changes
You get direct, programmatic access to the world's largest medical database without the web UI friction.
Use it from Claude, ChatGPT, Cursor or another AI client you already have.
One account · 5,900+ Connectors
- Real-world use case 01
Finding CRISPR research
A researcher asks for recent studies on gene therapy for sickle cell disease to see what's been published this year.
- Real-world use case 02
Verifying clinical evidence
A doctor asks for systematic reviews on a specific drug's side effects to check for the latest safety data.
- Real-world use case 03
Mapping citation chains
A science writer wants to see which papers cite a landmark 2015 study to find the most recent developments in the field.
Complete set · 3capabilities
The complete PubMed / NCBI capability set.
These are the exact actions your AI can choose when you ask it to work with PubMed / NCBI.
01—03
3 capabilities in this set.
Part of 3 available through PubMed / NCBI.
- 01 Capability
Get pubmed article
Get the full metadata for a specific PubMed article using its PMID. This is great for pulling complete abstracts and author lists.
- 02 Capability
Get pubmed citations
Find all the papers that cite a specific PubMed entry. Use this to see how a piece of research has been used over time.
- 03 Capability
Search pubmed
Search for biomedical research articles using keywords and boolean operators. It returns titles, abstracts, and MeSH terms.
Set up in minutes
One URL. Then ask PubMed / NCBI to work.
Claude and ChatGPT only need the Connector URL. Copy it once, add it in settings, and use PubMed / NCBI from the conversation.
Choose your client
Live previewAdvanced clients IDE · CLI
Claude · Web + desktop
Connector URL · ready to paste
Streamable HTTPhttps://edge.vinkius.com/vk_preview_3aYYvqqs4fnvKGxLKm5c4Bvw1V6ho3hQWjsKTg0C/mcp - Step 01
Open Connectors
In Claude Web or Claude Desktop, open Settings and choose Connectors.
- Step 02
Add the URL
Choose Add custom connector, name it PubMed / NCBI, and paste the URL above.
- Step 03
Turn it on in chat
Select +, open Connectors, and enable PubMed / NCBI for the conversation.
ChatGPT · Web + desktop
Connector URL · ready to paste
Streamable HTTPhttps://edge.vinkius.com/vk_preview_3aYYvqqs4fnvKGxLKm5c4Bvw1V6ho3hQWjsKTg0C/mcp - Step 01
Open MCP settings
On desktop, open Settings and MCP servers. On web, open your workspace app or connector settings.
- Step 02
Add the URL
Choose Add server with Streamable HTTP, or create a custom MCP app, then paste the PubMed / NCBI URL.
- Step 03
Save and start
Save the connection and enable PubMed / NCBI in your conversation. Desktop may ask you to restart once.
Cursor · IDE configuration
Advanced setup
{
"mcpServers": {
"pubmed": {
"url": "https://edge.vinkius.com/vk_preview_3aYYvqqs4fnvKGxLKm5c4Bvw1V6ho3hQWjsKTg0C/mcp"
}
}
} - Step 01
Open MCP Settings
Press Cmd+Shift+P (macOS) or Ctrl+Shift+P (Windows/Linux) → search "MCP Settings"
- Step 02
Add the server config
Paste the JSON configuration above into the mcp.json file that opens
- Step 03
Save the file
Cursor will automatically detect the new Connector
- Step 04
Start using PubMed / NCBI
Open Agent mode in chat and ask: "Using PubMed / NCBI, help me...". 3 tools available
VS Code Copilot · IDE configuration
Advanced setup
{
"mcpServers": {
"pubmed": {
"url": "https://edge.vinkius.com/vk_preview_3aYYvqqs4fnvKGxLKm5c4Bvw1V6ho3hQWjsKTg0C/mcp"
}
}
} - Step 01
Create MCP config
Create a .vscode/mcp.json file in your project root
- Step 02
Add the server config
Paste the JSON configuration above
- Step 03
Enable Agent mode
Open GitHub Copilot Chat and switch to Agent mode using the dropdown
- Step 04
Start using PubMed / NCBI
Ask Copilot: "Using PubMed / NCBI, help me...". 3 tools available
Windsurf · IDE configuration
Advanced setup
{
"mcpServers": {
"pubmed": {
"url": "https://edge.vinkius.com/vk_preview_3aYYvqqs4fnvKGxLKm5c4Bvw1V6ho3hQWjsKTg0C/mcp"
}
}
} - Step 01
Open MCP Settings
Go to Settings → MCP Configuration or press Cmd+Shift+P and search "MCP"
- Step 02
Add the server
Paste the JSON configuration above into mcp_config.json
- Step 03
Save and reload
Windsurf will detect the new server automatically
- Step 04
Start using PubMed / NCBI
Open Cascade and ask: "Using PubMed / NCBI, help me...". 3 tools available
Cline · IDE configuration
Advanced setup
{
"mcpServers": {
"pubmed": {
"url": "https://edge.vinkius.com/vk_preview_3aYYvqqs4fnvKGxLKm5c4Bvw1V6ho3hQWjsKTg0C/mcp"
}
}
} - Step 01
Open Cline MCP Settings
Click the Connectors icon in the Cline sidebar panel
- Step 02
Add remote server
Click "Add Connector" and paste the configuration above
- Step 03
Enable the server
Toggle the server switch to ON
- Step 04
Start using PubMed / NCBI
Ask Cline: "Using PubMed / NCBI, help me...". 3 tools available
Claude Code · Terminal command
Advanced setup
claude mcp add pubmed --transport http "https://edge.vinkius.com/vk_preview_3aYYvqqs4fnvKGxLKm5c4Bvw1V6ho3hQWjsKTg0C/mcp" - Step 01
Install Claude Code
Run npm install -g @anthropic-ai/claude-code if not already installed
- Step 02
Add the Connector
Run the command above in your terminal
- Step 03
Verify the connection
Run claude mcp to list connected servers, or type /mcp inside a session
- Step 04
Start using PubMed / NCBI
Ask Claude: "Using PubMed / NCBI, show me...". 3 tools are ready
Where the request belongs
Work PubMed / NCBI can move forward.
This is for the person who spends their day digging through peer-reviewed journals to find evidence for a paper, a treatment plan, or a news story.
Biomedical Researcher
Finding follow-up studies and citation chains for lab work on a Tuesday afternoon.
Healthcare Professional
Quickly looking up clinical evidence or treatment guidelines for specific diseases.
Science Journalist
Verifying primary sources and peer-reviewed data for accurate scientific reporting.
Build the capability set
Add more capabilities.
Each Connector adds new actions and data without changing how you work.
Browse ConnectorsStanford PubMed
Search biomedical literature from the world largest database of life science and medical research publications.
CrossRef
Search 140M+ scholarly works across all scientific disciplines. with DOI resolution, citation counts, author lookup, and full bibliographic metadata from the world's largest DOI registry.
OpenAlex
Access 250M+ scholarly works with open bibliometric data. search papers, authors, institutions, and trending research topics. The open-source alternative to Scopus and Web of Science.
PMC Open Access (PubMed Central)
Access millions of open-access biomedical and life sciences research articles. Search metadata, convert IDs, and discover full-text resources.
Elsevier ScienceDirect
Access millions of scientific, technical, and medical research articles and book chapters directly from your AI agent.
Scopus
Access the world's largest abstract and citation database. Search for research papers, authors, and institutional profiles directly.
Bring your own AI
Change the model, client or framework. Keep PubMed / NCBI connected.
-
Claude -
ChatGPT -
Gemini -
Cursor -
VS Code -
Windsurf -
ZCode -
Cline -
Zed -
Continue -
Kiro -
Roo Code -
Zencoder -
Goose -
Void -
Augment Code -
Amp -
Qodo -
Tabnine -
Pieces -
Sourcegraph Cody -
JetBrains -
Warp -
Amazon Q -
Antigravity -
BoltAI -
Raycast -
Jan -
LM Studio -
AnythingLLM -
Open WebUI -
Msty -
Cherry Studio -
LibreChat -
TypingMind -
Chorus -
5ire -
n8n -
LangChain -
LlamaIndex -
CrewAI -
Vercel AI SDK
Before you connect
Questions about PubMed / NCBI.
The practical details behind the request, access and result.
Can the PubMed MCP find specific clinical trials?
Yes, you can search for clinical trials by using keywords related to the disease or the specific intervention you are researching.
Does the PubMed MCP require an API key?
No, you do not need a separate API key. You can connect it directly through Vinkius and start searching immediately.
How can I use the PubMed MCP to find citations?
You can ask your agent to find papers that cite a specific study. This helps you see the impact of research and find newer follow-up studies.
Can I search for specific gene symbols or drugs?
Yes, the Connector supports searching by gene symbols, drug names, and various other biomedical topics.
Does the PubMed MCP provide full abstracts?
Yes, it pulls the full abstract along with authors, journals, and MeSH terms for any article you find.
Is the PubMed MCP good for science journalists?
It is excellent for journalists who need to find primary sources and peer-reviewed evidence to ensure their reporting is accurate.
Do I need an API key or any registration to use PubMed?
No. PubMed E-utilities are freely accessible to everyone without registration. An optional API key (available at ncbi.nlm.nih.gov) increases your rate limit from 3 to 10 requests per second, but is not required for standard usage.
What types of searches are supported and how can I refine my results?
You can search by keyword, disease name, gene symbol, drug name, author surname, or journal title. Boolean operators (AND, OR, NOT) and field tags like [Title], [Author], and [MeSH Terms] work natively. Example: 'CRISPR AND cancer NOT review' targets original research on CRISPR in oncology.
Can I access full-text articles through this server?
This server returns complete abstracts and metadata for all indexed articles. Full-text access depends on publisher open access policies. articles from PubMed Central (PMC) are freely available. The DOI link provided with each result allows direct navigation to the publisher's page.
One connection away
Give your agent a direct line to PubMed / NCBI.
Connect PubMed / NCBI once. Keep it beside 5,900+ managed Connectors when the next task needs more.
Explore every Connector No credit card required · Free tier available