Use Primer Design Calculator with your AI.
Connect your account once and let the AI you already use work with it, without building another integration. Design optimal PCR primers and analyze their thermal and structural properties.
Developed, maintained, and hosted by Vinkius.
MCP VERIFIED · PRODUCTION READY · VINKIUS GUARANTEED
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Works with modern AI clients that support MCP, including ChatGPT, Claude, Cursor, and more.
Complete set · 4 capabilities
The complete Primer Design Calculator capability set.
These are the exact actions your AI can choose when you ask it to work with Primer Design Calculator.
01-04
4 capabilities in this set.
Part of 4 available through Primer Design Calculator.
- 01
Analyze stability
Evaluates the risk of secondary structures like hairpins and dimers for a specific primer or pair
- 02
Calculate thermodynamics
Provides detailed physical properties for a specific DNA sequence
- 03
Design primers
Generates a pair of optimal primers based on a target DNA sequence and user-defined constraints
- 04
Verify specificity
Checks if the proposed primers will bind to unintended locations in a provided genomic reference
Observed, not estimated
857ms average. Fast in production.
Primer Design Calculator is checked daily against the live service.
- Fastest day
- 827ms
- Slowest day
- 1109ms
- 14-day trend
- Improving-24%
Connect your client
One URL. Every client.
Activate the Connector, copy your link, and paste it into the client you already use. 4 capabilities arrive ready to run.
Preview access · not provider authentication
The vk_preview_* token belongs to Vinkius preview infrastructure. It lets Claude discover and display the capabilities of Primer Design Calculator, so you can see the experience inside your AI.
It does not authenticate your account with Primer Design Calculator. Actions requiring credentials or live account data may not run until you activate the Connector and authorize the service.
Primer Design Calculator Connector
You're all set. Choose your MCP client and follow the setup instructions.
https://edge.vinkius.com/vk_preview_Lb6JeQKIu1hjeqb9yApcjsmf3zvpS5oj6DduWq8l/mcpClaude Desktop
Follow the steps below to connect in seconds.
- 1In Claude Desktop, open Settings → Connectors.
- 2Click “Add custom connector” and paste the connector link above as the remote MCP server URL.
- 3Click Add and start a new chat — Primer Design Calculator capabilities are ready to use.
{
"mcpServers": {
"primer-design-calculator-mcp": {
"url": "https://edge.vinkius.com/vk_preview_Lb6JeQKIu1hjeqb9yApcjsmf3zvpS5oj6DduWq8l/mcp"
}
}
}
Claude
ChatGPT
Cursor
VS Code
Windsurf
Claude Code
JetBrains
Cline
Step-by-step instructions for each client are in the guide. How to connect
FAQ
Questions Primer Design Calculator owners ask.
- 01
How do I design a new pair of primers?
You can use the design_primers capability by providing the target DNA sequence and the desired amplicon size.
- 02
Can I check if my primer will form a hairpin?
Yes, use the analyze_stability capability to evaluate the risk of hairpins and dimers for your sequences.
- 03
How is the melting temperature calculated?
The calculate_thermodynamics capability calculates the melting temperature (Tm) based on the base composition and salt-adjusted models.
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