GenBank/NCBI API Connector for AI agents.
4 live capabilities
Query genomic sequences and protein metadata using natural language.
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Why people use GenBank/NCBI API
GenBank/NCBI API for Genomic Sequence Auditing
This Connector changes that. You just tell your agent what you're looking for in plain English. It handles the database queries and pulls the metadata back to you, letting you focus on the science instead of the navigation.
What Vinkius changes
You get direct access to NCBI's genomic data through a natural conversation with your agent.
Use it from Claude, ChatGPT, Cursor or another AI client you already have.
One account · 5,900+ Connectors
- Real-world use case 01
Finding a specific protein sequence
A biologist needs to find human insulin records.
- Real-world use case 02
Quick summary of a sequence
A researcher has a UID and needs to know the publication date.
- Real-world use case 03
Checking database availability
A lab manager wants to know if the nuccore database is accessible before starting a batch job.
Complete set · 4capabilities
The complete GenBank/NCBI API capability set.
These are the exact actions your AI can choose when you ask it to work with GenBank/NCBI API.
01—04
4 capabilities in this set.
Part of 4 available through GenBank/NCBI API.
- 01 Capability
Check api status
Check if the NCBI E-utilities service is currently online. Use this to make sure your research pipeline isn't blocked by downtime.
- 02 Capability
Get ncbi summary
Retrieve a technical summary for a specific NCBI sequence ID. It provides the title and publication details for a specific record.
- 03 Capability
List ncbi databases
List all the biological databases available through NCBI. This lets you see the full range of data you can query.
- 04 Capability
Search ncbi sequences
Search for biological sequences in databases like nuccore or protein using a keyword. This helps you find specific genetic records instantly.
Set up in minutes
One URL. Then ask GenBank/NCBI API to work.
Claude and ChatGPT only need the Connector URL. Copy it once, add it in settings, and use GenBank/NCBI API from the conversation.
Choose your client
Live previewAdvanced clients IDE · CLI
Claude · Web + desktop
Connector URL · ready to paste
Streamable HTTPhttps://edge.vinkius.com/vk_preview_0wuiFY9KFNe14e8WQok4IyjNxTHA4yJHIB6E1Y2E/mcp - Step 01
Open Connectors
In Claude Web or Claude Desktop, open Settings and choose Connectors.
- Step 02
Add the URL
Choose Add custom connector, name it GenBank/NCBI API, and paste the URL above.
- Step 03
Turn it on in chat
Select +, open Connectors, and enable GenBank/NCBI API for the conversation.
ChatGPT · Web + desktop
Connector URL · ready to paste
Streamable HTTPhttps://edge.vinkius.com/vk_preview_0wuiFY9KFNe14e8WQok4IyjNxTHA4yJHIB6E1Y2E/mcp - Step 01
Open MCP settings
On desktop, open Settings and MCP servers. On web, open your workspace app or connector settings.
- Step 02
Add the URL
Choose Add server with Streamable HTTP, or create a custom MCP app, then paste the GenBank/NCBI API URL.
- Step 03
Save and start
Save the connection and enable GenBank/NCBI API in your conversation. Desktop may ask you to restart once.
Cursor · IDE configuration
Advanced setup
{
"mcpServers": {
"genbankncbi-api": {
"url": "https://edge.vinkius.com/vk_preview_0wuiFY9KFNe14e8WQok4IyjNxTHA4yJHIB6E1Y2E/mcp"
}
}
}- Step 01
Open MCP Settings
Press Cmd+Shift+P (macOS) or Ctrl+Shift+P (Windows/Linux) → search "MCP Settings"
- Step 02
Add the server config
Paste the JSON configuration above into the mcp.json file that opens
- Step 03
Save the file
Cursor will automatically detect the new Connector
- Step 04
Start using GenBank/NCBI API
Open Agent mode in chat and ask: "Using GenBank/NCBI API, help me...". 4 tools available
VS Code Copilot · IDE configuration
Advanced setup
{
"mcpServers": {
"genbankncbi-api": {
"url": "https://edge.vinkius.com/vk_preview_0wuiFY9KFNe14e8WQok4IyjNxTHA4yJHIB6E1Y2E/mcp"
}
}
}- Step 01
Create MCP config
Create a .vscode/mcp.json file in your project root
- Step 02
Add the server config
Paste the JSON configuration above
- Step 03
Enable Agent mode
Open GitHub Copilot Chat and switch to Agent mode using the dropdown
- Step 04
Start using GenBank/NCBI API
Ask Copilot: "Using GenBank/NCBI API, help me...". 4 tools available
Windsurf · IDE configuration
Advanced setup
{
"mcpServers": {
"genbankncbi-api": {
"url": "https://edge.vinkius.com/vk_preview_0wuiFY9KFNe14e8WQok4IyjNxTHA4yJHIB6E1Y2E/mcp"
}
}
}- Step 01
Open MCP Settings
Go to Settings → MCP Configuration or press Cmd+Shift+P and search "MCP"
- Step 02
Add the server
Paste the JSON configuration above into mcp_config.json
- Step 03
Save and reload
Windsurf will detect the new server automatically
- Step 04
Start using GenBank/NCBI API
Open Cascade and ask: "Using GenBank/NCBI API, help me...". 4 tools available
Cline · IDE configuration
Advanced setup
{
"mcpServers": {
"genbankncbi-api": {
"url": "https://edge.vinkius.com/vk_preview_0wuiFY9KFNe14e8WQok4IyjNxTHA4yJHIB6E1Y2E/mcp"
}
}
}- Step 01
Open Cline MCP Settings
Click the Connectors icon in the Cline sidebar panel
- Step 02
Add remote server
Click "Add Connector" and paste the configuration above
- Step 03
Enable the server
Toggle the server switch to ON
- Step 04
Start using GenBank/NCBI API
Ask Cline: "Using GenBank/NCBI API, help me...". 4 tools available
Claude Code · Terminal command
Advanced setup
claude mcp add genbankncbi-api --transport http "https://edge.vinkius.com/vk_preview_0wuiFY9KFNe14e8WQok4IyjNxTHA4yJHIB6E1Y2E/mcp"- Step 01
Install Claude Code
Run npm install -g @anthropic-ai/claude-code if not already installed
- Step 02
Add the Connector
Run the command above in your terminal
- Step 03
Verify the connection
Run claude mcp to list connected servers, or type /mcp inside a session
- Step 04
Start using GenBank/NCBI API
Ask Claude: "Using GenBank/NCBI API, show me...". 4 tools are ready
Where the request belongs
Work GenBank/NCBI can move forward.
This is for the biologist or bioinformatician who's tired of jumping between browser tabs to find specific sequence IDs or protein metadata. It's for researchers who need to verify data quickly without the manual overhead of the NCBI portal.
Bioinformatician
Uses this to quickly verify UIDs and audit molecular patterns across multiple databases without manual searching.
Geneticist
Retrieves official metadata and sequence summaries directly into their workflow to speed up research.
Research Student
Performs rapid audits of protein properties and identifies biological markers using natural language queries.
Lab Operations Lead
Automates scientific data querying to keep cross-functional research teams moving without manual bottlenecks.
Build the capability set
Add more capabilities.
Each Connector adds new actions and data without changing how you work.
Browse ConnectorsEnsembl
Access genomic data, gene trees, homologies, and cross-references from the Ensembl database directly from any AI agent.
UniProt
Search 250M+ protein sequences with functional annotations, gene names, subcellular locations, and amino acid data from the world's most comprehensive protein knowledge base.
KEGG
Access the Kyoto Encyclopedia of Genes and Genomes (KEGG) to query genomic, chemical, and systemic functional information directly from your AI agent.
GBIF
Search 2.4 billion biodiversity records. find any species on Earth with full taxonomy, observation locations, and geographic distribution from the Global Biodiversity Information Facility.
EBI Proteins API
Query the UniProt knowledge base for protein sequences, annotations, and functional data across millions of characterized entries.
EBI InterPro
Classify protein sequences into families, predict functional domains, and explore evolutionary relationships across species.
Bring your own AI
Change the model, client or framework. Keep GenBank/NCBI connected.
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Claude -
ChatGPT -
Gemini -
Cursor -
VS Code -
Windsurf -
ZCode -
Cline -
Zed -
Continue -
Kiro -
Roo Code -
Zencoder -
Goose -
Void -
Augment Code -
Amp -
Qodo -
Tabnine -
Pieces -
Sourcegraph Cody -
JetBrains -
Warp -
Amazon Q -
Antigravity -
BoltAI -
Raycast -
Jan -
LM Studio -
AnythingLLM -
Open WebUI -
Msty -
Cherry Studio -
LibreChat -
TypingMind -
Chorus -
5ire -
n8n -
LangChain -
LlamaIndex -
CrewAI -
Vercel AI SDK
Before you connect
Questions about GenBank/NCBI.
The practical details behind the request, access and result.
Can I use the GenBank/NCBI API to find protein sequences?
Yes, it lets your agent search specific databases like protein to find records based on your keywords. This saves you from having to manually browse the NCBI website.
Does the GenBank/NCBI API require an API key?
No, it uses the NCBI E-utilities service which is free and open. You can start using it immediately without any complex setup or registration.
How does the GenBank/NCBI API help with genomic research?
It lets your agent pull UIDs, titles, and technical summaries directly into your conversation. This makes it much easier to verify biological markers or audit records quickly.
Can the GenBank/NCBI API check if the service is working?
Yes, you can ask your agent to check the API status. This ensures the NCBI service is online before you start a large research task, preventing unnecessary errors.
Is the GenBank/NCBI API good for students?
It's great for students who need to perform rapid audits of protein properties or identify biological markers. It provides a way to query data using natural language.
What kind of data can I get from the GenBank/NCBI API?
You can retrieve sequence UIDs, bibliographic summaries, and metadata for various biological records including proteins and nucleotides from the NCBI databases.
Is an API Key required for GenBank/NCBI API?
No. The NCBI E-utilities API is a free and open service provided by the United States government. This server works out of the box without any static credentials required.
Which databases are supported?
The API supports multiple databases including 'nuccore' (Nucleotide), 'protein', 'pubmed', and 'gene'. Use the list_ncbi_databases capability to see the full list.
What is an NCBI UID?
A UID is a unique identifier assigned to each record in an NCBI database. Your agent uses these UIDs to retrieve specific summaries and detailed metadata.
One connection away
Give your agent a direct line to GenBank/NCBI.
Connect GenBank/NCBI once. Keep it beside 5,900+ managed Connectors when the next task needs more.
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