Atlassian (Jira & Confluence) MCP Server for Cline 9 tools — connect in under 2 minutes
Cline is an autonomous AI coding agent inside VS Code that plans, executes, and iterates on tasks. Wire Atlassian (Jira & Confluence) through the Vinkius and Cline gains direct access to every tool — from data retrieval to workflow automation — without leaving the terminal.
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{
"mcpServers": {
"atlassian-jira-confluence": {
"url": "https://edge.vinkius.com/[YOUR_TOKEN_HERE]/mcp"
}
}
}
* Every MCP server runs on Vinkius-managed infrastructure inside AWS - a purpose-built runtime with per-request V8 isolates, Ed25519 signed audit chains, and sub-40ms cold starts optimized for native MCP execution. See our infrastructure
About Atlassian (Jira & Confluence) MCP Server
Transform your Atlassian Jira and Confluence instance into a conversational command center for your AI agent. This integration bridges the gap between complex agile workflows and actionable intelligence, allowing your agent to audit Jira issues, manage active sprints, and retrieve deep knowledge from Confluence wikis through natural language. Whether you're tracking a bug's lifecycle or auditing enterprise documentation, your agent acts as a direct, real-time navigator across your Atlassian ecosystem, ensuring your team stays aligned and data-driven without manual dashboard hopping.
Cline operates autonomously inside VS Code — it reads your codebase, plans a strategy, and executes multi-step tasks including Atlassian (Jira & Confluence) tool calls without waiting for prompts between steps. Connect 9 tools through the Vinkius and Cline can fetch data, generate code, and commit changes in a single autonomous run.
What you can do
- Jira Issues & Search — Search issues using complex JQL, view exact tickets, or manage epics and stories seamlessly through your agent.
- Agile Boards & Sprints — List active boards, explore historical sprints, and get an overarching view of project health effortlessly.
- Confluence Wikis & Pages — Search across enterprise documentation using CQL, list spaces, and extract the full textual content of rich wiki pages.
- Project & Identity Oversight — Browse available projects and see the identity mappings of the current user automatically.
- Knowledge Retrieval — Stream rendered HTML or textual properties of specific Confluence pages directly into your conversation context.
The Atlassian (Jira & Confluence) MCP Server exposes 9 tools through the Vinkius. Connect it to Cline in under two minutes — no API keys to rotate, no infrastructure to provision, no vendor lock-in. Your configuration, your data, your control.
How to Connect Atlassian (Jira & Confluence) to Cline via MCP
Follow these steps to integrate the Atlassian (Jira & Confluence) MCP Server with Cline.
Open Cline MCP Settings
Click the MCP Servers icon in the Cline sidebar panel
Add remote server
Click "Add MCP Server" and paste the configuration above
Enable the server
Toggle the server switch to ON
Start using Atlassian (Jira & Confluence)
Ask Cline: "Using Atlassian (Jira & Confluence), help me..." — 9 tools available
Why Use Cline with the Atlassian (Jira & Confluence) MCP Server
Cline provides unique advantages when paired with Atlassian (Jira & Confluence) through the Model Context Protocol.
Cline operates autonomously — it reads your codebase, plans a strategy, and executes multi-step tasks including MCP tool calls without step-by-step prompts
Runs inside VS Code, so you get MCP tool access alongside your existing extensions, terminal, and version control in a single window
Cline can create, edit, and delete files based on MCP tool responses, enabling end-to-end automation from data retrieval to code generation
Transparent execution: every tool call and file change is shown in Cline's activity log for full visibility and approval before committing
Atlassian (Jira & Confluence) + Cline Use Cases
Practical scenarios where Cline combined with the Atlassian (Jira & Confluence) MCP Server delivers measurable value.
Autonomous feature building: tell Cline to fetch data from Atlassian (Jira & Confluence) and scaffold a complete module with types, handlers, and tests
Codebase refactoring: use Atlassian (Jira & Confluence) tools to validate live data while Cline restructures your code to match updated schemas
Automated testing: Cline fetches real responses from Atlassian (Jira & Confluence) and generates snapshot tests or mocks based on actual payloads
Incident response: query Atlassian (Jira & Confluence) for real-time status and let Cline generate hotfix patches based on the findings
Atlassian (Jira & Confluence) MCP Tools for Cline (9)
These 9 tools become available when you connect Atlassian (Jira & Confluence) to Cline via MCP:
get_issue
Get Jira issue details by exact key
get_myself
Get current authenticated user information
get_page
Get Confluence page rich text content
list_boards
Often used before retrieving backlogs or active sprints. List all Jira agile boards
list_projects
Useful for discovering project keys needed for querying specific domains or boards. List all Jira projects
list_spaces
List all Confluence spaces
list_sprints
List sprints for a specific Jira board
search_content
Search Confluence content with CQL
search_issues
Search Jira issues with JQL
Example Prompts for Atlassian (Jira & Confluence) in Cline
Ready-to-use prompts you can give your Cline agent to start working with Atlassian (Jira & Confluence) immediately.
"Get my active Jira sprint tickets related to frontend errors."
"Find Confluence wiki pages detailing the 'Payment Gateway API' architecture."
"List all active boards and the sprints currently running in them."
Troubleshooting Atlassian (Jira & Confluence) MCP Server with Cline
Common issues when connecting Atlassian (Jira & Confluence) to Cline through the Vinkius, and how to resolve them.
Server shows error in sidebar
Atlassian (Jira & Confluence) + Cline FAQ
Common questions about integrating Atlassian (Jira & Confluence) MCP Server with Cline.
How does Cline connect to MCP servers?
Can Cline run MCP tools without approval?
Does Cline support multiple MCP servers at once?
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Connect Atlassian (Jira & Confluence) to Cline
Get your token, paste the configuration, and start using 9 tools in under 2 minutes. No API key management needed.