Integrate Zenodo with Claude, Cursor, Chatbots & AI Agents MCP Server

Q: Can I delete a deposition that has already been published?

No. The delete_deposition tool only works for unpublished depositions. Once a record is published on Zenodo, it is permanent to ensure scientific traceability.

Manage scientific research and datasets on Zenodo—create depositions, upload files, and search records directly from your AI agent.

GDPR Free for Subscribers

Compatible with every major AI agent and IDE

Claude

ChatGPT

Cursor

Gemini

Windsurf

VS Code

JetBrains

Vercel

+ other MCP clients

create

Create deposition on Zenodo

You can optionally provide metadata. Create a new Zenodo deposition

delete

Delete deposition on Zenodo

Note: Only unpublished depositions can be deleted. Delete an unpublished Zenodo deposition

delete

Delete deposition file on Zenodo

Delete a file from a Zenodo deposition

discard

Discard deposition on Zenodo

Discard edits on a Zenodo deposition

edit

Edit deposition on Zenodo

Edit a published Zenodo deposition

get

Get deposition on Zenodo

Retrieve a Zenodo deposition by ID

get

Get record on Zenodo

Retrieve a published Zenodo record by ID

list

List deposition files on Zenodo

List files in a Zenodo deposition

list

List depositions on Zenodo

List Zenodo depositions

list

List records on Zenodo

Search published Zenodo records

new

New version deposition on Zenodo

Create a new version of a Zenodo deposition

publish

Publish deposition on Zenodo

WARNING: Once published, a deposition cannot be deleted. Publish a Zenodo deposition

update

Update deposition on Zenodo

Update a Zenodo deposition

upload

Upload deposition file on Zenodo

Upload a text file to a Zenodo deposition

Security & Code Integrity Audit

Every tool in the Zenodo MCP Server is continuously audited by the Vinkius Security Engine. We guarantee zero-trust payload isolation, strict data boundaries, and deterministic execution for enterprise-grade AI agents.

FScore: 3.6

How Vinkius protects your data

Is there a risk of the AI "going crazy" and deleting important company data?

No. With Vinkius, the AI operates on "rails". It can only make the exact moves you authorized in the tool's settings. It cannot invent routes, access other networks in your company, or decide to delete random files. If the action isn't in the approved catalog, the attempt is blocked instantly.

How does the AI access my passwords and credentials?

It simply doesn't. On Vinkius, your passwords, API keys, and login details are kept in a secure vault. The AI (like ChatGPT or Claude) merely "asks" Vinkius to perform the task. Vinkius opens the door, does the work, and hands the result back to the AI. Your credentials are never seen, read, or learned by the artificial intelligence.

What if the AI ends up reading customer data or confidential information?

We have a built-in digital "bodyguard" called DLP (Data Loss Prevention). If a tool fetches data and the response contains social security numbers, credit cards, or personal customer info, Vinkius magically blocks and erases that information before it is delivered to the AI. The AI works only with what is strictly necessary, and your sensitive data never leaks.

Can I delete a deposition that has already been published?

No. The delete_deposition tool only works for unpublished depositions. Once a record is published on Zenodo, it is permanent to ensure scientific traceability.

Triggering Zenodo via Natural Language

The Zenodo MCP server handles authentication and payload formatting, allowing your LLM to perform deterministic actions.

Secure open access Access for Agents

The Zenodo toolkit provides structured tools for open access. It enables conversational interfaces like Claude Code to query and modify data within your knowledge management infrastructure.

Seamless research data Integration

Add research data functionality to your custom chatbots. The Zenodo MCP handles the payload formatting required for ChatGPT and Claude to interface with knowledge management endpoints.