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Integrate UniProt with Claude, Cursor, Chatbots & AI Agents MCP Server

Search 250M+ protein sequences with functional annotations, gene names, subcellular locations, and amino acid data from the world's most comprehensive protein knowledge base.
MCP Inspector GDPR Free for Subscribers

Compatible with every major AI agent and IDE

ClaudeClaude
ChatGPTChatGPT
CursorCursor
GeminiGemini
WindsurfWindsurf
VS CodeVS Code
JetBrainsJetBrains
VercelVercel
+ other MCP clients
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Get uniprot protein on UniProt

Get full protein details by UniProt accession ID

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Search uniprot on UniProt

Returns protein name, gene, organism, function, subcellular location, and sequence. Try: insulin, hemoglobin, p53, BRCA1, spike protein. Search UniProt for proteins by name, function, or keyword

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Search uniprot gene on UniProt

Returns all protein isoforms and their functional annotations. Find proteins encoded by a specific gene

Security & Code Integrity Audit

Every tool in the UniProt MCP Server is continuously audited by the Vinkius Security Engine. We guarantee zero-trust payload isolation, strict data boundaries, and deterministic execution for enterprise-grade AI agents.

MCP Inspector
A+Score: 98.33

How Vinkius protects your data

Can I set different limits for each virtual assistant on my team?

Absolutely. You have full control in our command center. You can create an AI agent that only "reads" data so the support team can answer questions, and another superpowered agent that can "edit" and "create" information exclusively for your operations team. Each AI gets exactly the level of access you allow.

Can I audit what my AI agents are doing with this integration?

Yes, Vinkius provides an immutable, HMAC-chained audit log. Every tool execution, payload, and response is tracked in real-time on your dashboard, giving you complete visibility into your agent's actions.

Does the AI train on my tools or API data?

No. Vinkius enforces a strict Zero-Retention policy. Your data simply passes through our secure servers to complete the requested action and is instantly forgotten. Nothing you do here is ever stored, logged, or used to train any artificial intelligence.

What is the difference between Swiss-Prot and TrEMBL entries?

Swiss-Prot contains 570K+ entries that have been manually reviewed and curated by expert biologists — the gold standard for protein annotation. TrEMBL contains 250M+ entries that are computationally annotated from gene sequences. Swiss-Prot entries are marked as 'reviewed' and are highly reliable; TrEMBL entries are automatically generated and may contain errors.

Triggering UniProt via Natural Language

This integration supports direct MCP execution, enabling your chatbots to query and modify data within these specific environments.

Managing protein sequences inside Claude

The UniProt connection gives ChatGPT direct access to protein sequences tools. The integration handles the logic required for continuous the unthinkable operations.

Streamlining bioinformatics

The UniProt integration allows Cursor and ChatGPT to securely fetch bioinformatics data. It handles the API requests required for the unthinkable operations.

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